Affymetrix Netaffx Annotations in JMP table form

Click on a file to download and store on your disk. File can be joined with your data file on probe set ID.

All IVT (non-Exon) annotations in one zip file are here. (only 66MB)

Annotations derived from July 07 2008 version of Affymetrix NetAffx website.

Exon annotations for: Human, Mouse, and Rat chips now available.

Chip names
DrosGenome1 , Drosophila_2
HGFocus
HGU95AV2
HGU133A , HGU133B , HGU133A2 , HGU133Plus2
Hu6800
MGU74A , MGU74B , MGU74C
MGU74AV2 , MGU74BV2 , MGU74CV2
MOE430A , MOE430B
Mouse430V2 , Mouse430AV2
Porcine
RAE230A , RAE230B , Rat230V2
RGU34A , RGU34B , RGU34C
Rhesus
Xenopus laevis
YGS98
Zebrafish

Annotations include some or all of the following:
probe set ID, title, Unigene, LocusLink, sequence derived from GenBank ID, GeneSymbol, and map location.
YG_S98 chip also contains SGD accession number. Note: SwissProt, UniGene ID, Gene Title, Entrez Gene, and Alignments fields only have the first value, and if there were multiple ones present in the original files, column [field],multiple will contain a 1.